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While alignment to outgroup sequences is unreliable, both maximum-likelihood and GUIDANCE-PhyloBayes reconstructions support Thermotogales and Aquificales as sister clades (see Additional file 5).
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While, alignments to every reference genome were identified, typically they showed identity to regions corresponding to large, highly conserved genes [ 13].
If you feel any of these postures are too easy, just hold the posture for one full minute while maintaining healthy alignment to test your strength and steadiness of mind and body.
While some alignment problems remain, the introduction of individual genome sequences corrects the majority of obvious anomalies and reveals a surprising amount of genetic regulatory information that was masked by alignment to the reference sequence.
While alignment error may indeed contribute to the signal we observe, we do not believe it to play a major role.
While we detected several sequence alignments to spirurid nematodes in both the DNA and RNA sequence data, none of these species are known to be present in the US or to infect taurine cattle.
This is based on the observation that the contigs both contain nonaligning sequence on the 5′-end while the alignment appears to continue beyond the 3′-ends of the sequences.
While alignment of the Matina 1-6 anchored physical map contigs to the Criollo genome sequence revealed long stretches of collinear sequence, there were also many instances of rearrangements by either inversion or translocation and instances of duplication.
GLEAN uses transcript alignments to support splice predictions, but does not merge or split genes based on transcript alignments, while MAKER2 creates gene models that best agree with transcript alignments, and works best with highly reliable transcript assemblies.
It was concluded that SWNT concentration and dispersion are the key variables for improving electrical conductivity, while alignment plays a secondary role.
It can be found that fiber diameter, pore diameter, porosity, stress and strain along length direction decrease while alignment degree and apparent contact angle have no obvious change as the increasing of DCD.
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