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We use this variable to apply a nonmaximum suppression process per lane which removes overlapped candidates.
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Finally, the last step is a 16-kb deletion overlapping the second inversion, which removes most of RAB17, the entire PRLH gene and a large part of MLPH (between breakpoints BP5 and BP1).
These gaps are good targets for IMAGE, the software responsible for closing gaps in the PAGIT toolkit, which removes end-sequence from contigs while attempting to extend them with re-sequencing data and to overlap adjacent contigs.
Are there options to remove overlapping parts in the reads?
For overlapping variants between GWAS and EXOME, variants from EXOME were used to remove overlapping variants from GWAS.
We used only the top two ranked hits for each sequence and removed overlapping results.
The handle was then obtained with Boolean operation, which removed the cylinder model volume, which was in overlap with the hand model volume.
We raised a question as to how often alternative splicing removes overlaps?
After QC, which included removing reads overlapping the organelle and repeated regions, the average sequencing coverage for each variety was reduced to between 0.95× and 4.96× (Additional file 1), indicating that between 63 and 73%% of the reads mapped to the excluded regions.
Considering the low percentage of overlaps amongst Mendelian disease (SVD), cancer somatic (CSM) and neutral polymorphic variants (SAP and SVP), we did not remove overlaps in our analysis, which we now describe.
In order to remove overlap between subgraphs, edge removal and term duplication are processed.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com