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First, the CYP3A4 Cα atoms were used to overlap the structures of the coordinate sets in the five 10 ns segments with the X-ray structure.
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To investigate the effect of overlapping reads, the "merge overlapping pairs" module in the CLC Genomics workbench was used to overlap the paired-end reads [ 26].
For the evaluation, the GPS x y position was used to overlap the SLAM-constructed map with the MMS map, as shown in Fig. 18c.
The maximum fill-factor is achieved when the two-layer vertical stack is used to overlap the non-sensitive areas of one layer with the sensitive areas of the other one.
11 The Pymol program was used to overlap and compare the predicted FABP2 model with rat FABP2 structure.
To get RNA-seq quality metrics, bedtools utility (http://bedtools.readthedocs.org) was used to overlap TopHat2 mappings with mapping quality of at least 20 and defined exons and introns with a minimum overlap fraction of.8.
This small section of handle will be used to overlap the blades together later in the process.
The UCSC table browser was used to overlap γH2AX peaks with various regulatory features.
For overlapping variants between GWAS and EXOME, variants from EXOME were used to remove overlapping variants from GWAS.
Reciprocal T-CSSLs and K-CSSLs (CSSLs with Koshihikari genetic background) on chromosome 5 were used to detect overlapping QTL regions.
Correlation coefficients like Pearson and Manders' were used to estimate overlapping fluorescent signals during dual immunohistochemistry.
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