Also, three research prototype tools have been selected for the comparison: ▪Aruvi is the prototype implementation of an information visualization framework that supports the analytical reasoning process [22].
The top 50 DEGs of each list were selected for heatmap visualization (Fig. S3).
Straight, unbranched, postcapillary venules (15 to 50 μm in diameter) overlying the knee capsule were selected for visualization.
For 3seq data, only transcripts with at least twofold change were selected and for miRNA data, only miRNAs with at least an expression level of 1000 RPM and at least a twofold change were selected for visualization in JavaTree View.
Proteins contributing to the enrichment score for 'stress response (general)', or 'glycolysis/gluconeogenesis' that were increasing more than twofold with age, or proteins contributing to the enrichment score for 'mitochondria (general)' and 'DNA replication' that were decreasing more than twofold with age were selected for visualization (from Figure 3B ).
Transcripts contributing to the enrichment score for 'integral to membrane', or 'sporulation' that increased more than twofold with age, or transcripts contributing to the enrichment score for 'mitochondria(respiration)' and 'mitochondria translation)' that decreased more than twofold with age were selected for visualization (from A).
An examination of the significantly up- and downregulated genes revealed distinct gene families that were highly represented, and these were selected for further analysis and visualization.
Individual clones were selected for expression of the construct through Western blot analysis and on the basis of visualization of fluorescence intensity using fluorescence microscopy.
All probesets with fold change >30 % and P < 0.01 were selected for functional clusterization (DAVID, Database for Annotation, Visualization and Integrated Discovery [ 75]. The enrichment score was determined through DAVID.
Therefore, k = 25 was selected for further visualization in Java Tree View [ 37] and for data mining.
