Sentence examples for were refined with from inspiring English sources

The structures obtained were refined with the PHENIX refinement package phenix.refine [33] where intermittent model building was performed by using COOT [34].

The models were refined with a side-chain refinement and energy minimization process.

In the final stages of refinement, atomic displacement parameters were refined with TLS (Translation Libration Screw-rotation) parameTranslation Libration Screw-rotation

The models thus generated were refined with PHENIX using individual B-factor refinement (occupancies were not refined).

To improve refinement stability and associated model quality in low resolution refinement, the cGMP and partial apo structures were refined with phenix.refine using dihedral restraints obtained from the higher resolution PKG Iβ cAMP structure.

On the up side, the best appetizers were refined, with a delicate balance of flavors, and attractively presented.

All non-hydrogen atoms were refined with anisotropic displacement parameters.

All non-hydrogen atoms were refined with anisotropic thermal parameters.

All the structures were refined with the PHENIX packages (Adams et al., 2002).

NH hydrogen atoms were refined with a distance restraint of N H = 0.88(2) Å.

For the protein structure H atoms initially assigned in calculated positions were refined with isotropic thermal parameters.