Aligned reads were realigned to the genome.
Data were realigned to correct for head motion and normalized to a mode of 1,000 (one multiplicative constant applied to all voxels and all frames).
The street's name was changed to West Broadway in 1897 to remove the vestiges of Tweedism, and the numbers were realigned to run from south to north in conformance with the rest of the city's grid.
Reads that passed the alignment quality criteria were realigned to local reference genome fragments using Cross_match software; the refined alignments were parsed for sequence variation between the subject and the reference.
Ninety-three million reads comprising 7.4-fold coverage (Fig. 1a, see also Supplementary Fig. 2) passed the filtering criteria and were realigned to local genome segments (41 kb each) using Cross_match software.
Subsequently, all volumes were realigned to correct for head motion, by using a rigid body transformation.
For details, functional images were realigned to the first volume, slice timing corrected, and normalized to the MNI template and spatially smoothed with an 8-mm Gaussian kernel.
At first, all scans were realigned to one mean image, which had been obtained across all conditions, to correct for movement artifacts.
The remaining volumes were corrected for the intra-volume acquisition time delay using slice-timing and were realigned to the first volume using the six-parameter (rigid body) spatial transformation.
The routes were realigned to the bypass between 1976 and 1989.
When the Western Bypass around the southwestern fringe of the city was constructed in the late 1970s and early 1980s, US 20 and NY 5 were realigned to follow the highway around the city.
