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Data from the 'sleeping' nodes were predicted using probabilistic models.
Stabilizing substitutions were predicted using four different techniques.
Functional areas were predicted using PROSITE.
RNA secondary structures were predicted using RNAfold.
CpG islands were predicted using the program CpGcluster [16].
RNA secondary structures were predicted using Mfold [47].
Coding sequences (CDS) were predicted using GLIMMER2.0 and ORPHEUS.
Three dimensional structures were predicted using Swiss-model.
Putative gene structures were predicted using the GenScan program [26].
Secondary structure elements were predicted using Talos+ [21].
Secretion signals for all SERK3 homologs were predicted using SignalP3.
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