A set of 43,502 genes was predicted, out of which 1,880 genes had alignments larger than 30% to a TE protein database [ 36]; these genes were filtered out.
Cloverleaf secondary structure of tRNAs of this genome was predicted, out of which representative structures of tRNAphe and tRNAser are shown.
Figure 2 shows how many essential proteins are predicted out of all the different proteins identify by PeC and those identified by DC, BC, CC, SC, EC, IC, BN, DMNC, LAC, SoECC, RL, LI, LR, NC, and MC.
In addition, by using BcePred server, different structural properties of the proteins were predicted to find out their potential B cell epitopes.
On average, 83 samples were predicted correctly out of 84 samples across the two-year experimental period.
Four most probable DnaK-binding motifs were predicted, and out of which except aa 128 134, other three are excluded by our deletion mutation experiments.
For example, ReC06 is similar to a prediction of five out of the six studies used, while ReC25, ReC58 and ReC59 were predicted by four out of six.
As expected from previous work, two transmembrane domains were predicted for 45 out of 46 RIF_B (97.8%).
Optimum conditions were predicted, and confirmed by carrying out some new experiments.
