There were 47 pathways that were only over-represented in KD subjects.
The exception was gibberellin-responsive genes that were not significantly over-represented in competition-responsive genes, whereas brassinosteroid-responsive genes were only over-represented in the leaf dataset.
Pathways related to the metabolism of carbohydrates were only over-represented when SDE genes with <2-fold change were included in the pathway analysis, (Table 3, Additional file 6).
Collagen I (α-1) (collagen collagen I (α-2) (COL1and and collagen III (α -1) (COL3A1) were only over-expressed in the WI when compared to the Ma (Table 4).
25 GO terms were enriched in the down-regulated gene list for SRG150, including GO terms enriched for SRG100 such as the carbohydrate metabolic process (GO 0005975), and some GO terms were only over-represented in the hybrid, such as the response to stress (GO 0006950) and to abiotic stimulus (GO 0009628) (Additional file 3).
Also genes from tocopherol biosynthesis, mevalonate and carotenoids in secondary metabolism, as well as from biosynthesis of serine, glycine, cysteine, glutamate, aspartate and alanine amino acids were only over-represented in cluster I. Transcription factors (TFs) were mostly under-represented in this cluster I.
That is, cell death and related GO terms were only over-represented when analyzing the evidence-based gene set (Additional file 4: Figure S2, ORA_Empirical.png), suggesting a possible research bias since in the set of computationally predicted miRNA-interacting genes no GO term related to apoptosis emerged as significant (Additional file 5: Figure S3, ORA_Predicted.png).png
Nucleotide binding and eukaryotic translation initiation factor 3 were over-represented only in the presence of S4, whereas DNA-directed RNA polymerase activity and cellular components integral to membrane were only over-represented in the presence of AS13 (Additional file 7: Figures S5 and Additional file 9: Figure S7).
If we put all the burden on senior women then we are only over-burdening them.
They claim that the meteorites are only over-shots from the plant after one of them lands in a pub.
FLRG was only over-expressed in the IDC, suggesting that FLRG is strongly correlated with tumor progression and breast malignancy.
