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If the neighbors were on the same strand, but between 1 kb and 5 kb away, they were recorded as ambiguous.
When analysed, 49% of the SVAs found within 10 kb upstream of transcriptional start sites were on the same strand as the gene, for these reasons we also tested whether their function was orientation dependant.
Ten genomic scaffolds with two or more of the 110 initially identified miRNAs were on the same strand, with a maximum distance of 3.5 kb between the most distant miRNAs in the largest cluster.
The overlapping gene pairs were then classified into (1) the same-strand overlap type if the genes involved were on the same strand or (2) the different-strand overlap type if the genes were on opposite strands.
Similar(56)
The rRNA genes are nearly diametrically opposed, and all but two proteins and one tRNA on one side of them are on the same strand, while all but one tRNA on the other side are on the opposite strand.
Because all the annotated binding sites for each TF are on the same strand of DNA, we first use only the strand containing the annotated sites.
& Applicable only if the predicted sRNA and the gene flanking its 5' end are on the same strand.
For some animals, all genes are on the same strand, whereas for others they are divided between the two.
In extreme situations, all reads can be on the same strand (examples in Additional file 1: Table S9).
Table 3 reports the mapped exon-exon junction statistics for each strain.> -wrap-foot> *Required to be on the same strand, when strand is known.
Intragenic miRNAs were defined as miRNAs located between the start and end of a protein coding gene that is on the same strand (termed the host gene).
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CEO of Professional Science Editing for Scientists @ prosciediting.com