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Once the sequences for each T. vaginalis gene (Table 2) were mined from the database, putative start and stop codons were inferred on the basis of the inferred translation with reference to pairwise comparisons (BLASTx of GenBank) and multiple sequence alignments of homologous proteins.
In this work, the ring strains in γ-butyrolactone, δ-valerolactone and ϵ-caprolactone were inferred on the basis of infrared and Raman spectroscopy data.
In 18 more cases, distinct folds for different enzyme isoforms were inferred on the basis of their sequence similarity to proteins with known 3D structures.
The phylogenetic tree and rates of amino acid substitution for each branch were inferred on a concatenated alignment of 76 ribosomal protein families using MrBayes 3 [ 89] under the WAG model.
Phylogenetic trees were inferred on PhyML (phylogenetic estimation using maximum likelihood) (Guindon et al. 2010), and a bootstrap consensus tree was created (1,000 bootstrap replicates, initial tree BioNJ, model of nucleotides substitution GTR [general time reversible]).
We had to keep in mind however that the Nagano et al. were inferred on a much larger dataset so that any result from the comparison must be considered with caution.
Similar(47)
Because of the stringent cutoff values required for inclusion in a pham, these results identify one way experimentally determined properties of a protein can be inferred on others sharing the same phamily.
Accordingly, phylogenetic affinities can be inferred on the basis of relative similarity.
A slightly more remote relationship to the echinoderms is inferred on the basis of resemblances between the larvae in some groups of hemichordates and echinoderms.
In Seurat's original, the model standing in the center forms the apex of an equilateral triangle whose two sides can be inferred: on the left by a seated version of the model seen from the back and on the right by a second seated woman donning a pair of stockings.
A claim is a statement being inferred on the basis of experimental data analysis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com