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The presence of predicted microsatellite repeat motifs and correspondence of fragment length polymorphism with repeat length expansion/contraction for each polymorphic markers were inferred among chickpea genotypes.
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Three haplotypes of FAE1 can be inferred among these seven B. rapa accessions.
From both trees a close relationship could be inferred among the zoarcid species, although COI is a functional gene and the 16SrRNA is a structural RNA.
The trees indicated that a genetic drift model might explain the divergence of the two German breeds, but no reliable phylogeny could be inferred among the remaining breeds.
To assess the extent of genetic diversity that can be inferred among human subpopulations by the different arrays, we next compared their FST distributions (Wright 1951).
1-5 are B. rapa haplotype 1; accession No. 6 is B. rapa haplotype 2 and accession No. 7 is B. rapa haplotype 3. Seven haplotypes of FAE1 can be inferred among these nine B. oleracea accessions.
Recombination had been previously noted at this large scale [ 6, 20] and can also be inferred among the French Guiana multilocus genotypes, as visualized by the reticulation pattern of the haplotype network.
The two diplomonad sequences are found together with a Trichomonas sequence among a mixture of eubacterial and archaeal species, indicating a prokaryote-to-eukaryote gene transfer event to a hypothetical uniquely shared ancestor of diplomonads and parabasalids (box B in Figure 3) – unless several independent gene losses are inferred among a broad range of eukaryotic lineages.
Relationships have been inferred among some of these species using basic chromosome numbers, ITS (the internal transcribed spacers of ribosomal RNA genes) DNA data [ 24] and sequences from chloroplast genes such as ndhF (F subunit of NADH dehydrogenase) [ 25], ndhF and trnL-F [ 26], trnL-F and rpl16 [ 27].
The phylogenetic relationships among taxa were inferred using Bayesian inference (BI) and maximum likelihood searches (ML).
As described below, similar but different topologies were inferred for relationships among the Asian clade when the larger taxon dataset was used.
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