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FDR estimation for which too few hits were generated used the score of the best False Positive as threshold with upper bound OMSSA e-value of 0.01 for subsequent data analysis.
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Graphics were generated using R36.
Molecular images were generated using UCSF Chimera57.
Sashimi plots were generated using MISO (v.0.5.4).
All structure figures were generated using Pymol.
Plots were generated using the plotProfile function.
The maps were generated using QGIS Version 2.14.1143.
Graphs were generated using Graphpad Prism software.
Secondary structures were generated using PSIPRED75 and MSAs using HHblits76.
Figures were generated using Chimera40, ChimeraX45 and PyMOL46.
The bigWig files were generated using deepTools69 (version 2.0).
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