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The settings selected for the rest of the analyses were complete linkage (cluster method) and Pearson correlation (distance metric).
In this set of simulations we simulated the scenario for which there were complete linkage disequilibrium QTL-markers and linkage equilibrium between markers in the founder population.
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The amalgamation rule used was complete linkage and distances between clusters were calculated according to Euclidean distances.
This is complete linkage hierarchical clustering, with the distances computed as the Euclidian distance between the logarithms of the fold changes in activity.
There was complete linkage disequilibrium between the two loci, giving two haplotypes: g.400 C- g.276 T and g.400 G- g.276 G.
The opposite of single linkage is complete linkage clustering (furthest neighbor method), which sets the similarity between two groups equal to the smallest similarity between an individual of one cluster and an individual of another cluster.
We grouped SNP loci that were perfectly collinear, that is, were in complete linkage disequilibrium in our sample of isolates.
Information on death and transfer was reported over time in clinics; data on death were completed through linkage with the National Population Register performed in October 2011.
Furthermore, the two SNPs in TLR4 (A1571T and G1807A) were in complete linkage disequilibrium, and were also significantly associated with IBD.
Because TMEM106B SNPs rs1020004, rs1990622 and rs6966915 were in complete linkage disequilibrium, pathological analyses were confined to rs 1990622.
The W chromosome and mitochondria are in complete linkage, being co-transmitted each generation.
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