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Sequence data were assembled using NewBler assembler and Consed.
Resulting sequences were assembled using the assembler in Geneious v5.1.7.
These genomes were assembled using the IDBA-UD assembler.
Sequences were assembled using PEAR.
Short reads were assembled using SOAPdenovo35.
Corrected reads were assembled using SOAPdenovo2.
Individual metagenomes were assembled using Ray-meta.
The reads were assembled using the A5-miseq pipeline51.
Remaining residues were assembled using automated microwave-assisted SPPS.
The genomes were assembled using Platanus version 1.2135.
Transcripts were assembled using the genome-guided pipeline from Trinity79.
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