Intraspecific interactions were also inferred from nearest-neighbour analysis.
Further, phylogenetic relationships among genes of each of the three gene families were also inferred.
The MTs for most of the processed events were also inferred routinely by JMA and NIED institutions.
Analogously such competing mechanisms were also inferred for one of the PE-X materials, while the other exhibited substantial degradation in terms of strain-to-break values for both aging conditions.
Within the same DCB specimen, as the crack tip advanced beyond the patterned region, a rising R-curve type trend was observed as fracture energy increased with increasing crack lengths, which were recorded visually and were also inferred using compliance and crack length relationship.
Phylogenies for testing LGT hypothesis were also inferred using fast neighbor-joining method implemented in BIONJ [44], [45].
MLV phylogenies were also inferred using the program PhyML that implements the fast maximum likelihood (ML) method [38].
Finally, modern and ancestral effective population sizes were also inferred under the isolation-with-migration model implemented in the software IM v. 31 July 2006 [23], [49], [50].
Functional linkages were also inferred from physical interactions predicted between proteins pairs based upon modeling their 3-dimensional structures into X-ray crystal structures of homologous protein complexes.
To assess the impact of sequence alignment, RAxML trees were also inferred under the same settings from the other alignments, an approach known as multiple analysis [64], [65]; for details, see supporting file S3.
EFL phylogenies were also inferred from an alignment with the 7 longest branches excluded: Ditylum brightwellii, Thalassiosira pseudonana, Reticulomyxa filosa, Planoglabratella opercularis, Goniomonas amphinema, and cytosolic sequences from Bigelowiella natans and Gymnochlora stellata (data not shown).
