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One more thing we need to note is that in African rice, the cultivated and wild type are not well grouped into only two clusters but intersect, which was also observed in the nuclear genome analysis conducted by Wang et al. (2014).
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We classified the expression patterns of individual genes as well as genes grouped into Biological Process ontologies and Metabolic Pathway categories using statistical criteria.
For each individual the available number of wells with macrophages were grouped into four classes with equal number of wells and cells per class.
Independent analyses were compared to identify commonalities as well as differences, and grouped into interpretive themes.
When analysing data using responses grouped into 'very well-placed' versus 'fairly well-placed/not very well-placed/not at all well-placed', results differed; a greater number of sub-groups displayed fair kappa values, for libraries and pharmacies in particular, and more so within the 800 m buffer than the 1000 m buffer (as seen in the sensitivity analysis).
When analysing data using responses grouped into 'very well-placed' versus 'fairly well-placed/not very well-placed/not at all well-placed', fair agreement was seen for pharmacies within 800 m straight-line buffers, and 800 m and 1000 m network buffers, while fair agreement was shown for libraries within 800 m and 1000 m straight-line buffers.
Embryos were then grouped into individual wells of a 12 well plate, each well containing 3 10 embryos in 1 ml of 1X E3 buffer, 1% DMSO, and 1 mM Tris pH 7.5.
They were grouped into individual wells of a 12 well plate, each well containing 3 10 embryos in 1 ml of 1X E3 buffer (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33 mM MgSO4), 1% DMSO, and 1 mM Tris pH 7.5.
Within the Old World clade, taxa were generally grouped into well-defined biogeographic assemblages.
In all species examined, the identified six PSMCs, grouped into well-supported clusters along with each vertebrate and yeast PSMC (fig. 1 B), which gives strong support for their orthology (numbers at nodes indicate PPs [MrBayes] and bootstrap percentages [PhyML]).
The superfamilies designated in Repbase were used with some modifications: recent phylogenetic work by Yuan and Wessler [ 31] suggested certain separate superfamilies are grouped into well-supported clades and should be consolidated, and this convention was used here.
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