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A complete list of these DMRs and links to the WashU Epigenome Browser were provided on the accompanying website (Methods).
I performed a tblastn search using the Arabidopsis protein GI 25402830 as a query and the C. reinhardtii genome sequence ver2 in the Joint Genome Institute website (see Methods).
The conservation scores in Figure 6 are the output of the PhastCons algorithm [ 41] and are pre-calculated on the UCSC Genome Browser website (see Methods).
To this end, we use gene expression microarray data from 149 human ventricle samples collected from public microarray sources, including Gene Expression Omnibus and Harvard's CardioGenomics website (see Methods).
We note that "protein ID" numbers are used throughout this report to designate both the gene and the predicted protein, because these identifiers conveniently lead to the complete information in the T. virens genome website (see Methods).
Over 2000 Drosophila-related papers are now typically published each year (Supplementary Figure S1) and there are many demands on curators in addition to curation of journal publications (e.g. responding to user requests; helping to enhance the design of the public website; developing methods to capture new data types of interest to the community).
WolframAlpha is another, more versatile website with methods for performing algebraic functions.
These pseudogene annotations were taken from the VEGA and websites (see Methods for details).
All reports not fulfilling this publication (eg, results reported in registries, conference abstracts containing results, trial summaries on sponsor websites containing methods and results) will be also collected.
Of the genes that were predicted to contain an NF κB binding site by both programs and had evidence from Pathway Studio as having a direct binding relationship with NF κB, only CEBPD and EGR1 were not previously on the "known" list of targets at available websites (see Methods).
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