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The part of the sentence "we originally thought" is correct and usable in written English.
You can use this phrase when you are talking about something you believed in the past that you no longer believe. For example, "We originally thought that the project would take one week to complete, but now it looks like it will take much longer."
Exact(60)
We originally thought that YrL693 originated from Th. intermedium because the pedigree of L693 includes Th. intermedium [ 18, 31].
"The opportunity here is much larger than we originally thought".
It was so much more complex than we originally thought.
"China clearly needs longer than we originally thought," he said.
"MERS turned out to be something completely different than what we originally thought," Monacelli said.
"The history of ceramic technology is longer and more diverse than we originally thought," she said.
"Things have certainly come together significantly faster than we originally thought," Frost said.
"Chagas has a different face than we originally thought it did," she said.
"That gave us more time than we originally thought we had".
"It became clear that it was probably a lot bigger than we originally thought".
"Drawing up this contract was more complex than we originally thought," Mr. Levy said.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com