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montanus, (3) hybrid (including F1, F2 and backcrosses) using two different approaches: In the conservative assignment, we only assigned individuals as hybrids when they were detected by all three programs.
Coding for the presence of misconceptions was done conservatively; we only assigned a misconception to a response when the student explicitly stated it.
We only assigned our own thresholds to data for which clustering by EM was not possible (i.e., when traits were measured qualitatively, or too few data points were available).
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If a sequence tag has multiple hits, we only assign it a single category based on the following priority: ncRNA from Rfam, known plant microRNA, repeat-associated RNA and mRNA degradation product.
We also implement a unanimous voting scheme in which we only assign a label to the query object if all k neighbours 'agree' or contain that label.
To achieve the desired memory reduction for ancestral probability vectors (in contrast to the initial paper (Stamatakis and Ott, 2008b) where this was not implemented), for each gene we only assign as much memory as is required for the number of ancestral nodes contained in the gene-tree.
Furthermore, when recreating the "human model" as a PT host we have only assigned the higher reactivity to the presence of chemokines, which, of course, may not actually be the case.
We will only assign students of the same gender to multiple occupancy apartments.
Although we could only assign few OR genes to chromosomes, there is evidence that OR genes occur on at least 9 and 10 chromosomes in the zebra finch and the chicken (out of 40 and 39, respectively).
Interestingly, adhering to the previous criteria, we could only assign an LSR to two of the 37 species (~5%) both being Atlantic with ~95% of the included species having an uncertain LSR based solely on morphology.
We believe that the fact that the simulated individuals were only assigned to 3 studies did not influence the results.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com