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This functionality as deployed in the ArrayExpress Archive is powered by the Apache Lucene as a search engine, and we have packaged the EFO-powered search extension as a separate Java library.
We have packaged several of these tools into a single Virtual Machine pipeline, SV-AUTOPILOT, to facilitate reproducible research and coupled that with a powerful merging script that filters and ranks calls providing researchers with an accurate dataset on which to begin their bench validations.
This approach takes its toll on the installation process, but in order to make it less complicated, we have packaged and precompiled most of these third party tools and have written a detailed step-by-step installation manual that is distributed with the tool [ 30].
"Just because we've packaged it nicely doesn't actually make it a gimmick".
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