In our model, we annotated the antisense transcript boundary and quantified the reads in annotated antisense regions (See Methods).
Initially, we annotated the multisample VCF with the SnpEff genetic variant annotation and effect prediction toolbox [ 12].
We annotated the consensus sequence for each mtDNA using the GenBank annotation of the D. melanogaster reference sequence (NC_001709).
We annotated the repeats in the genome by combining in silico prediction and homology searches.
We annotated the clusters based on the function of known CM members.
Afterward, we annotated the transcript with "pluses" and "wishes," the organization's preferred language for "good" and "bad".
We annotated the predicted gene models using Swiss-Prot, TrEMBL, NCBI NR database, and KEGG databases (Supplementary Table 3.4).
We annotated the CpG-islands to promoters based on overlaps to promoter regions from GENCODE 19 genes.
We annotated the 6th and the 7th groups as having the switched enhancer because some linked enhancer interaction were decreased while others were increased.
In computer vision, corner points are easily detected, so we annotated the eye corners.
We annotated the functionally characterized genes based on the phenotypes described in each of the articles (Table 1).
