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We annotated protein-coding genes (PCGs), RNA, pseudogenes and catalogued functional annotations for PCGs.
For T. parvula contigs and A. thaliana chromosomes, we annotated repetitive elements (Online Methods).
For those SVs that occurred within gene regulatory domains, we annotated with the nearest gene name.
We annotated the repeats in the genome by combining in silico prediction and homology searches.
We annotated the clusters based on the function of known CM members.
We annotated 1817 posts comprised of 4966 sentences of an existing online diabetes community.
Afterward, we annotated the transcript with "pluses" and "wishes," the organization's preferred language for "good" and "bad".
We annotated the predicted gene models using Swiss-Prot, TrEMBL, NCBI NR database, and KEGG databases (Supplementary Table 3.4).
We annotated the CpG-islands to promoters based on overlaps to promoter regions from GENCODE 19 genes.
There were not many different genes in the colonic mucosa of high FCR group compared with low group after we annotated these and removed genes of low expression.
In addition, for 956 genes in benchmarking universal single-copy orthologs (BUSCO) analysis, we annotated 96.7% genes, and 95.4% of these are complete.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com