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In order to optimize the alignment, we align the domains separately and then join the alignments.
Suppose we align a read using two aligners A and B and get different results.
After that we align the resulting ancestrally-ordered alignments to each other using LAGAN [ 39].
For both simulated data sets, we align these reads using the four selected alignment programs.
An alignment score of b2 occurs only if we align a sequence of these symbols to itself.
To do so, we align the related domains with the MUSCLE (Edgar, 2004) alignment software.
We need to make sure that we align our policies".
We align our perceptions and beliefs to be consonant with our social identities".
"Our policy is very clear - we align shareholder value with executive reward," he said.
How could we align ourselves with an important group of potential competitors the equipment manufacturers?
Subsequently, we align images acquired in separate breath holds to this reference volume.
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