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"We've been benchmarking them.
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They've been benchmarked on the following and have revealed a 28percentt overall improvement.
The next word we had was benchmark – a benchmark is 'a standard from which other things are judged'.
To more easily draw comparisons with our systems, we re-used queries that have been benchmarked by other researchers available in Substructure Query Collection (SQC) [35].
The epitope prediction tools have been benchmarked, and we have observed that both pathogen and biologic proteins (such as proteins used in coagulation factor deficiencies) that have higher epitope densities as predicted by EpiMatrix tend to be more immunogenic (EpiMatrix whole protein score > 20), while low-density proteins tend to be immunologically inert.
We compared GSNAP with several alignment programs that have been benchmarked in previous studies: MAQ version 0.7.1, SOAP version 1.11, Bowtie version 0.9.9.1, BWA version 0.4.9 and SOAP2 version 2.19.
This agreement has been benchmarked against rivals, he said.
Two algorithms have been benchmarked : HIFOO and HINFSTRUCT.
The system design has been optimized and experimental results have been benchmarked using Monte Carlo simulation.
The method has been benchmarked by a sectional method validating its computing accuracy.
The CFD model has been benchmarked against in-house experiments and good agreement is achieved.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com