Exact(1)
For a quality control of polymorphism data used for classification, we conformed that one of the nucleotides in each pair of SNP alleles was the same nucleotide at the corresponding position in the cDNA sequence.
Similar(59)
We searched for sites within 20 bp of the heteroplasmic base substitution site that were the same nucleotide as the mutant base; likewise, we also searched for nearby sites that were the same nucleotide as the progenitor (wild type) site.
Interestingly, U > C > A is the same nucleotide preference order observed at the 3' termini of 24 nt siRNAs.
Note that the two edges of an SSR of exactly X repeated units cannot be the same nucleotide as the SSR itself.
When the tree was outgroup rooted, the topology of the combined Vlm protein data set was the same as for the nucleotide data, except for the third clade, which collapsed in the strict consensus tree to form a trichotomy.
LoxKR1 had four nucleotide mutations; of these, three mutated nucleotides were the same as the mutations in lox66, and one nucleotide was the same as the mutation in loxJTZ17.
The dynamic response of the adenine nucleotides was the same in both the XR/XDH-strain and the XI-strain.
Although an increase in the number of mismatches markedly reduced the relative signals for both evenly and randomly distributed MM probes, the data also showed that the relative signals of evenly distributed MM probes decreased faster than those of randomly distributed MM probes when the number of mismatch nucleotides was the same.
However, the tests support the null hypothesis for the modern and putative contaminant sequences indicating that the rate of nucleotide misincorporation was the same (Two sample T-test T-Value = −0.42, P-Value = 0.688; Mann-Whitney test W = 1137.0, p-Value = 0.8588).
Even the nucleotide sequence was the same as that found for isolate MM1, from Cameroon.
In the BI analysis, the model choice of nucleotide substitution was the same as described in ML analysis.
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