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One plain wall was tested as reference.
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Aeromonas salmonicida E11I4 and A. hydrophila CGMCC 1.0927 were tested as reference strains.
Four classical nonorthogonal JDC methods without nonnegativity constraints including ACDC [23], FFDIAG [25], LUJ1D [26], and QRJ1D [26] and one nonnegative JDC method ACDC LU + [41] are tested as reference methods.
ProC and rho have been tested as reference genes in similar studies of other bacteria, although no plant pathogens to our knowledge [ 27, 28].
Ribosomal protein 13 and 19 (rpl19, rPeptidylprolyllprolyl isomerase Aa (ppiaa), elongation factor 1 alpha, Glyceraldehyde-3-phosphate dehydrogenase (gapdh) and hypoxanthine phosphoribosyltransferase 1 (hprt1) were tested as reference genes.
We selected nine genes to be tested as reference transcripts (ACT, CYP, EF1α, GAPDH, RAN2, RPS13, SAND and UBQ) based on previous descriptions (see below) (Table 1).
One cold-adapted A (H1N1) and one cold-adapted B virus strain was tested, as well as the reference strain A/PR/8/34 (H1N1).
In addition, one specimen with Chevron bracing was tested as a reference.
The cytoplasmic actin (No. X04507) of the silkworm was tested as a reference to normalize variance among different samples.
HPTE was tested as a reference compound that acted as an ERα agonist and an ERβ antagonist.
The CR20L samples were tested as-received with spectral referencing with respect to nitromethane.
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