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The model was refined using rigid body refinement and the maximum likelihood function of CNS version 1.1 [64] and Refmac 5.2.0019 [65], with 5% of the data retained for cross-validation purposes.
The structure was refined using Refmac5 (22), and refinement statistics are listed in Table 1.
The model obtained from MOE was refined using the molecular dynamics refinement tool YASARA and stereochemical quality was analyzed with PROCHECK [32].
The structure was refined using iterative cycles of model building and refinement using COOT and phenix.refine, respectively.
The structure was refined using REFMAC5 (Murshudov et al, 1997), using TLS refinement.
The structure was refined using PHENIX 41 against the original twinned data yielding a final refined value for the twinning fraction of 0.481.
The structure was refined using COOT and iterative steps of manual rebuilding and positional refinement using Phenix.
The model was refined using gradient minimization with weight optimization and maximum-likelihood targets, TLS refinement, and individual atomic B-factor refinement.
Even the gasoline or diesel fuel that propels the vehicle was refined using rare-earth cracking catalysts containing lanthanum, cerium, or mixed-rare-earth oxides.
The modeled structure was refined using energy minimization.
The structure was refined using 1H 13C residual dipolar couplings.
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