Nearly 0.14 million unigenes were predicted out of which around one thousand genes were differentially expressed in the six comparison groups.
In the genome of Pl. halstedii a total of 274 RxLR-like proteins coding genes were predicted, out of which only 34 were having the RxLR-dEER motif typical for Phytophthora species.
Figure 2 shows how many essential proteins are predicted out of all the different proteins identify by PeC and those identified by DC, BC, CC, SC, EC, IC, BN, DMNC, LAC, SoECC, RL, LI, LR, NC, and MC.
The result, as could have been (and was) predicted, turned out to be the opposite of what was intended.
Of those, only one expressed fusion transcript was identified, although it was predicted to be out-of frame.
By using this calibration, the concentration of the sample left out was predicted.
Data of one subject were left out in the first cross-validation step, a PLS-DA model was built, and the treatment class membership of the subject that was left out was predicted.
Across years, logistic regression analysis showed drop out was predicted by younger age and year of treatment contact.
The activity for each compound was predicted using leave-one-out.
