Sentence examples for was initially refined from inspiring English sources

The model was initially refined in Refmac5 using rigid body followed by restrained refinement.

The model was initially refined with ARP/wARP and built through several rounds of refinement with Coot and Refmac.

The model was initially refined with isotropic atomic displacement parameters (ADPs); hydrogen atoms in riding positions were added later.

The MR solutions for both structures were initially refined using REFMAC, and subsequent rounds of refinement used PHENIX and manual model building with COOT.

The structures were initially refined using Refmac [ 27] and at later stages using Phenix [ 30] with individual positional and B-factor refinement and five Translation Libration Screw (TLS) groups (the heavy and light chains were split into two groups each, at the hinge between the constant and the variable domains, and the peptide as a separate group).

An alignment of the protein sequences was initially generated by MUSCLE software and refined manually.

H atom of N-H was initially located in a difference Fourier map and were refined with the restraint Uiso(H) = 1.2Ueq(N).

The atomic model was initially roughly placed in the rod density, and its position automatically refined with Chimera fit command.

This instrument was initially designed by [ Kramer and Hafner in 1989 31] and since its initial version, has been refined successively.

The accessory pathway location was initially classified by an established electrocardiographic algorithm in children [ 13] and subsequently refined according to the site of successful catheter ablation.

All models were initially built and refined in the density for the higher resolution engaged complex, and then rigid body fit into the density for the scanning sample.