The dissimilarity matrix was generated twice for pocket vs. pocket using a similar but more rigorous threshold, by expanding the binding pocket vicinity atoms to 6.5 Å, which should constitute a more difficult case than selecting a cut-off of 4 or 5 Å.
This data set was generated twice, with different levels of batch effects incorporated each time, creating technical duplicates for comparison.
Each sequence was generated twice and independently from regional cancer registry data (automatically as "algorithm sequences") and from medical record (manually as "observed sequences").
In the hydraulic experiment, the waves are generated twice and both sets of data are plotted.
In the case of normal execution, the new.apk file is generated twice and then loaded.
Another possibility is that the potential 'viritope sequence space' is very large, and thus, it is unlikely that the same viritope will be generated twice.
Additionally, glycolsylation sites are generated twice along the branch leading to E. multilocularis isoforms G and H (sites 49 and 87), and once (site 14) in the clade including E. granulosus, E. equinus, E. ortleppi and E. canadensis.
Note that, although the cluster { A, I, O, O, S, S} is generated twice when breaking T2 into clusters (since it is exhibited by T2 and also results from restricting the exhibited cluster { A, A, I, O, O, S, S} to ℳ by removing one copy of label A), it is taken into account only once.
Gene expression profiles were generated twice for each sample using standard cartridge format (mouse gene 1.0ST arrays, samples are hybridized separately over 2 days) and using the newer peg format arrays (mouse gene 1.1S T arrays, samples processed on two arrays of 24 samples each).
Cx3cr1 GFP/GFP ApoE−/− mice were generated twice with independently purchased Cx3cr1 GFP/GFP and ApoE−/− mice (once at the Laboratoire Immunité et Infection and once at the Institut de la Vision), and both Cx3cr1 GFP/GFP ApoE−/− mice strain generations were protected against the subretinal MP accumulation observed in the two Cx3cr1 GFP/GFP mouse strains of the two sites.
One set was generated with twice the mutation rate of the original 256-taxa tree, while the other had half the mutation rate of the original tree.
