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The filtered library file was assembled using the contig assembly program CAP3 [ 24].
A minimal contig set was assembled using the phrap assembler and all contigs were manually curated.
The 454 sequence was assembled using the 454 Newbler assembler version 2.3.
The resulting sequence data was assembled using the manufacturer supplied Newbler assembler followed by clustering using Phrap [38].
Quality-passed data was assembled using the de novo genome assembler AllpathsLG [ 57].
Each genome was assembled using various de Bruijn graph assemblers, and then misassembly errors were predicted.
The Tcas3.0 genome was assembled using the gold-standard Sanger assembly strategy [ 15].
The genome of X. dendrorhous was assembled using the Velvet [ 16] genome assembler.
The metagenome was assembled using the JGI's in-house bacterial assembly pipeline, utilizing lucy [ 67] for vector and quality screening.
Assembly of the sequence was accomplished using Phrap, and contiguous sequence was assembled using GAP4.
The entire structure, in fact, was assembled using remote-controlled cranes and giant military helicopters to drop metal beams, sand and concrete on the wrecked reactor.
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