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The other draft genome was annotated at JCVI using their annotation engine [8], which involves many tools, such as BLAST-Extend-Repraze [39], HMMER [40], RFAM [41], and InterPro [42].
Where no editing was annotated at all (eg, most angiosperm chloroplast [cp] DNA entries) RNA editing annotation was introduced manually into the same modifications database.
A set of 247 reads was annotated at least to the phylum level based on known 16S rRNA genes sequences from RDP database at an E-value cutoff ≤ 0.01.
GFP expression was annotated at 24 and 48 hpf.
It was annotated at Oak Ridge National Laboratory, Oak Ridge, TN 37831 and deposited as GenBank file CP000510.1.
Each gene was annotated at least twice independently and reconciled by a third investigator, giving increased confidence in the results.
Similar(52)
Perhaps the most obvious reason for this is annotation bias, which occurs because well-studied genes are assigned many annotations while the understudied genes may not be annotated at all [ 66, 67].
Through functional annotation, a total of 21,213 unigenes were annotated at least once against the NCBI nucleotide (Nt), non-redundant protein (Nr), Uniprot/SwissProt, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Arabidopsis thaliana proteome (TAIR) databases.
Transcripts were annotated at every bioinformatic level, and the annotation data was used to infer hypothetical interaction networks from differentially regulated genes.
Whereas a large number of miRNAs have been annotated at the structural level during the latest years, functional annotation is sparse.
The principal case is annotated at 83 A.L.R.3d 1024.
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