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Compared to the local alignment placements (Fig 7), the nucleotide preferences surrounding the HMM predictions were even more visually pronounced (Fig 9).
Chromosome 1, for example, has three visually pronounced groups of resolutions within which domain sets tend to be more similar than across (γ= [0.00-0.20], [0.25-0.70], and [0.75-1.00] — see Figure 4(b)).
Similar(58)
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com