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Convergence was assessed by ensuring that standard deviations of split frequencies between runs approached zero, visualizing split probabilities in AWTY [ 129], and comparing summarized tree topologies from separate runs.
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To find splits present in a data set and to visualize split support we used SAMS.
Convergence was also assessed in AWTY [ 129] to ensure that standard deviations of split frequencies between runs approached zero and visualize split probabilities.
The first convincing tool that could be used to visualize split support present in DNA- alignments was spectral analysis based on Hadamard conjugation [ 52, 53].
We visualized split-reads using Jalview [ 26].
Because conflicting and ambiguous phylogenetic signals can be visualized with split networks [29], we reconstructed a split network using the neighbor-net method based on the same data used in the tree-based analyses.
Just as Jimmy Carter had to watch the Iran hostage release as Ronald Reagan was sworn in as president, Mr. Clinton must visualize a split screen with his successor parading down Pennsylvania Avenue even as federal marshals wait with handcuffs for Citizen Bill.
In general, the utilization of backlog tools was seen useful as a way to visualize and split the work into tasks before the implementation.
To further ensure that family groupings were consistent, the relationships among aligned nucleotide sequences encoding VR1 or VR2 were visualized by split decomposition analysis using SPLITSTREE version 3.1 (14 ).
Neurons were visualized by split-GAL4 and LexA drivers in combination with pJFRC200-10XUAS-IVS-myr::smGFP-HA in attP18 and pJFRC216-13XLexAop2-IVS-myr::smGFP-V5 in su(Hw attP8, respectively.
Incompatible phylogenetic signals arising from recombination and genetic exchange were visualized by a split network constructed from all SNPs in the core genome (supplementary fig. S1, Supplementary Material online).
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