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To visualize the composition of different clusters concerning to their cellular role, we used an annotation by functional groups as previously described [ 15].
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The weighted UniFrac distance matrices were used to visualize the community composition.
A cumulative GC profile was assembled to visualize the general composition features of the TvLF using GC-content data [ 31].
Given the position of the motif of interest within a region, it can be informative to visualize the nucleotide composition properties in the flanking sequence.
A strength of this comparison is that it helps visualize the PCB composition for the subjects in each group, but it is insensitive to the absolute concentration of PCB in each sample.
A cumulative GC profile was assembled to visualize the general nucleotide composition features of the TvLF.
This may apply to the previous appearances of HCV in genomics literature (Deng et al., 2008; Wong et al., 2003), which were restricted to visualizing the base composition of chromosomes, an application which, I believe, does not demonstrate the strengths of HCV well.
Although the domain architectures were resolved for each scavenger receptor sequence, those from the Homo sapiens genome were used as representatives to visualize the relative lengths and composition of these domains in Figure 1 and explained in detail in Additional file 1: Table S2.
With the help of this feature, users can directly visualize the number of clusters and composition of each cluster identified in the input set of gene models.
We performed principal component analysis (PCA) to visualize the differences in cell wall composition among the accessions and then used this information to inform our selection of the final core collection.
Detrended correspondence analysis (DCA) was used to analyze and visualize the effect of habitat on species composition.
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