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To visualize module structures, we extracted the 50 genes with the highest module membership (nodes) and the strongest 500 gene-gene connections (edges) amongst these from the signed topology overlay matrix.
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In this way, we used this approach to identify and visualize modules of coexpressed genes, which were organized into modules of coexpressed genes with clear functional interpretations, and to explore module differences between breeds.
The generated sensor network layer is visualized in Visualization Module and mapped with the input data processed by Data Processing Module.
When the evaluation process was finished, the result was then visualized by the visualization module as shown in Figure 10(c).
Simultaneously, a link to visualization module is provided to visualize the interactions between GPCRs, G-proteins and effectors graphically.
The visualization module was designed for visualizing the evaluation results.
The results can then be visualized in SVA's built-in genome browser (visualization module).
To visualize representative modules, we used Cytoscape [ 33].
We further analyzed and visualized this module in Cytoscape and merged the turquoise network with the known PPIs from IntAct.
Character network visualization: this module extracts and visualizes character network using Prefuse API.
Matched MS2 spectra can be visualized with matplotlib module and/or saved to file for future visual examination.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com