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However, ex situ reconstructions such as models and movies are difficult to visualize in the context of the archaeological remains.
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The individual infected hepatocytes can be best visualized in the context of the whole liver when the mice are rotated as visualized in the Supplementary movies S1-S3.
They can be visualized in the context of the genome annotation by uploading the GFF file to the UCSC genome browser ([http://genome.ucsc.edu).ucsc.edu
Gene expression data were visualized in the context of specific biological and functional pathways using Gene Map Annotator and Pathway Profiler (GenMAPP, http://genmapp.org).
Using the UCSC genome browser, these data were then visualized in the context of multi-species conservation based on genomic alignment.
All systems biology datasets were analyzed and visualized in the context of the web executable, interoperable Gaggle data analysis environment [ 38] and other existing online database tools.
Thus, him-8 e1489) him-8 e1489duce a high numutants male produce (approximately 30%) due to increased X-chighosome missegregationumber can be easily visualized in the coftext of the Pxol-1::gfp; himalee1489) strain.
iThink has the advantage over spreadsheets in that each individual flow can be readily visualized in the context of the overall system structure and tested for both its local and global effects.
MapMan (http://mapman.gabipd.org ) (40 ), which is a user-driven tool for large datasets (e.g. gene expression data from microarrays) visualized in the context of diagrams of metabolic pathways or other processes.
The peptide sequences from this study were mapped onto the genomic sequence using the distributed annotation system available at Ensembl and can be visualized in the context of all other existing annotations.
To ensure that patient co-morbidities did not influence the gene expression profile, we performed principal components analysis (PCA) on the expression values of genes identified in this paper using the combined significant gene list and visualized in the context of COPD, diabetes, CAD class, and smoking status (Additional File 1).
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