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As a systematic representation of data amenable to rigorous analysis and visualization, networks have become ubiquitous in recent years across many scientific and social disciplines.
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These attribute files provide useful information for coloring the nodes and edges in the visualization network tools.
Furthermore, it also has a graphical interface for network visualization, called Network Animator (NAM) [29].
The network visualization and network topology indexes, calculated in the hubs detection process, were carried out using Cytoscape 2.8.2 and CytoHubba [ 47, 48].
Overall network visualization and sub-networks were visualized using Cytoscape [ 32].
Cytoscape has being developed for reconstruction and visualization of networks.
For segmentation and visualization of networks the MCODE plugin of Cytoscape was used (version 3.1.1, [ 49]).
Several software programs can be used for graphic visualization of networks (Huisman and Van Duijn 2005).
Distinct features include classification of interactions, web-based visualization and networks of functional gene sets.
An important tool in network analysis is the visualization of network topologies.
To provide researchers with an easy access to network visualization tools, several network analysis software come with sophisticated methods for laying out networks.
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