Sentence examples for visualising aligned from inspiring English sources

Visualisation: The package girafe contains functions for visualising aligned intervals with the powerful plotting facilities of R.

The BLAST tool [ 77], CAP3 assembler [ 78], ClustalW [ 79], and Treeview software [ 80] were used to compare, assemble, and align sequences and to visualise alignments.

Chromatographs were visualised, inspected, assembled, aligned with related sequences and analysed using the CLC Main Workbench 5.5 (CLC bio, Denmark).

The chromatograph calls were aligned and visualised using the software Geneious version 5.5 [ 75].

Additionally, each of the prophages that formed a clade were aligned and visualised using the BLAST algorithm from EasyFig 2.1 to show regions of sequence identity.

Compared to the previous analysis, our MSA investigation provides a very clear picture about the aligned and conserved residues with different colour codes visualised through JalView.

HybRIDS uses a colour triangle to visualise the sequence similarity between aligned sequences.

ClustalW [ 176] and Treeview software [ 177] were used to align sequences and visualise alignments.

Amino acid sequences of Dnd proteins from the diverse dnd-bearing hosts were multiply aligned with Muscle [7], visualised and edited with JalView [8].

Specific loci of interest were retrieved from the annotated assemblies, aligned with MUSCLE (Edgar, 2004) and visualised in SeaView (Gouy et al, 2010).

Single contigs were aligned against the parental synV sequence and visualised using the Integrative Genome Viewer26.