js: a graph theory library for visualisation and analysis.
The tools available are limited and often hard to use, while creating things bespoke is difficult, time consuming and expensive," says Clark. "Flourish solves this problem by enabling anyone to combine their data with an ever-growing library of visualisation templates.
These functions are accessible directly within the user interface of rxncon; using BooleanNet for simulation [ 11] and the biographer library for visualisation [ 12].
The system implements a novel method of visualisation and interaction with a library of fully described cases utilising statistical models of similarity, typicality and disease categorisation of cases.
This short article describes a component (PsicquicGraph) within the larger javascript library (BioJS) that assists the visualisation of molecular interactions on web pages.
D3 simplifies the manipulation of the DOM (Document Object Model) and provides visualisation components, which form the base of the SpeckTackle charting library.
Figure 2 shows a heat map visualisation of a digital Northern – based on EST frequencies in different libraries (Sterky et al. 2004) – of the OPLS-generated leaf gene list and shows that the greatest prevalence of genes was found in the shoot meristem, young leaf and apical shoot libraries.
An open source chart library "Chart.js" is integrated into ConTra as to enable the visualisation of contradictions.
Once a new library has been created, it can be further analysed using the various visualisation and chemoinformatics facilities included in SA2, or simply exported in any output format available.
Such versatility could be extended even further to include the dynamic visualisation of interacting proteins in live cells [ 22], and the development of combinatorial library approaches for identifying intracellular or extracellular signalling mechanisms affecting trafficking [ 23].
The benefits of the use of HRS are as follows: (i) easy application to catalyst library design, (ii) fast method in finding the global optimum, and (iii) good visualisation of a multidimensional experimental space.
