The winning design, by two artists in Essex, Mass., had two parts: a series of five huge boulders which, when viewed in alignment, would form the famous profile; and the seven profilers, whose bumpy tops form the outline of the Old Man's face when lined up with the cliff.
Of the other two, SnipViz has only very limited facilities and is designed for viewing SNPs in alignments of very similar sequences while Sequence is only designed for displaying single sequences and not MSAs.
This can be viewed in conjunction with the BamView read alignments so that layers of information can be harnessed to elucidate sequence detail.
Geneious Basic displays selected file(s) in a variety of different ways including sequence view (linear and circular), dotplot view, query-centric alignment view, protein domain view, 3D structure view, text view and notes.
"When people are committed to things, and the world view they have is no longer in alignment with our world view, then it becomes funny," he said.
The motion is part of a larger defense strategy to bring the court system of Baltimore in alignment with the views of fans of Serial, arguably the most successful podcast of all time.
Other options in the HTML output include viewing alignment, viewing Position Specific Probability Matrix (PSPM), and finding replications that are similar to the best motif found [ 5].
The "quality" of the alignment algorithms, i.e. mutual concordance of algorithmic and GS alignments, was analyzed from different points of view; in most cases, alignments based on intercomparison of three-dimensional structures were used as the GS alignments.
To view the alignment in color format and for further adjustment, third-party alignment viewing software may be used, such as SeqView (http://pbil.univ-lyon1.fr/software/seaview.html) and BioEdit (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).html
36 An inbuilt dataset of 10 human OR sub-clusters is available in the TM-MOTIF package for users to assign new sequences to these clusters and to view the alignment in VIBGYOR coloring scheme, along with identified conserved motifs on the alignment.
