Sentence examples for version parameter from inspiring English sources
Problems to solve are binaries without a version parameter and even more locating the software that was installed without using the package management system.
Table 2 Model parameter values for the literature-based (M1) with references (ref)., calibrated (M2) and filter-based (M3) model version Parameter M1 Ref. M2 M3 Productivity p max max.
This last one stores, on one hand, resulting files into the ad-hoc directory structure and, on the other hand, saves information into the database such as software version, parameters, links between analysis and resulting figures.
Corrected consensus sequences with low-quality score were further corrected with stranded RNA-seq reads using proovread55 (version 2.13.12, parameter setting: –mode sr).
For homology-based predictions, we used the repeat database Repbase16.1063 to identify known repeats in the genome assembly with the program RepeatMasker64 (Version 3.3.0) (parameter: -nolow -no_is -norna -parallel 1 -lib RepeatMaskerLib.embl.lib).lib
To correct gene models and to compare the expression between samples, each sample was first mapped against its reference genome using TopHat [ 89] (version v2.0.6, parameter -g ).
In Figure 4 (Authors comment: Figure 5 in the final version) the parameter sigma epsilon goes as high as 10 for lambda = 10.
In version 1.0, parameters are stored in an ordered way: the first parameter becomes card (3 values), the second parameter is bank (2 values) and the last parameter is function (2 values).
We searched the genome for tandem repeats with Tandem Repeats Finder61 (Version 4.04) (parameters: 2 7 7 80 10 50 2000 -d -h).
To identify miRNA and snRNA genes, infernal60 (version 1.1.2, parameters: –cut_ga rfam nohmmonly) was used to search the G. soja W05 genome assembly based on covariance models deposited in Rfam61 database (release 13.0).
For WGS assembly, clean reads were assembled by SOAPde novo53 (Version 2.04) (parameters: pregraph -s assembly.lib -K 63 -R -d 1 -o pm; contig -g pm –R; map -s assembly.lib -g pm -k 45; scaff -g pm).
