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Because these cells have low endogenous β-catenin activity, VP16-β-catenin was co-expressed with the reporter vectors in all samples.
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A SPM value close to 1.0 indicates the major contribution of gene expression in a designated sample (e.g. vector X i ) against that in all samples (vector X).
Also, the DROUGHT vectors were very close to the CTRL vectors (the two vectors in root/shoot samples pointed in the same direction and were almost parallel to each other).
and are the average values of the motion vectors in the sample blocks outside and inside the object boundary.
Combining with the estimated angle pair, a small sample database with nine sample vectors can be formulated as shown in Figure 5, where the similarities between measured phase difference vector and the vectors in small sample database are denoted as s i, i = 0, 1, …, 8.
PC1 was dominated by eight loci across the genome (two, four and two from chromosomes X, 2 and 3, respectively; Table 4A), indicating that eight loci are mainly responsible for separating the two major and the two minor vectors in our sample set.
The maternal and paternal vectors in each sample are also compared with each other, which reveals the location of homozygous regions.
The magnitude of differential transcription of a gene between two samples can be measured by the square root of the Jensen Shannon Divergence (JSD*) between the gene's transcript abundance vectors in each sample.
It can reduce the effect from mutual coupling and system error through comparison between measured phase difference vector and phase difference vectors in sample database[7, 8].
Correlation interferometer determines the incoming direction of signal through the comparison of measured phase difference vector and the vectors in sample database.
The correlation process aims to find the phase vector that most similar with the measured vector in the sample database.
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