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In generating the independent testing data set, we followed the procedure elaborated above for generating the training data set in order to associate each residue in the testing protein chains with a feature vector and labelled each residue as conformationally ambivalent or not based on the annotations in the MolMovDB database.
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As a result, conventional machine learning algorithms, which rely on well-structured instance (feature vector) and label pairs, may not work well in modeling PBM data.
Then data corresponding of all hybridizations (vector and labeled cDNA) were log2-transformed, normalized by the median of intensities by block then by array.
Klf4 promoter carrying sequences of −1694 to −903 and −820 to +153 were inserted into pGL-3 vector, and labeled as Klf4 promoter 1-Luci and Klf4 promoter 2-Luci, respectively.
The p27 promoter carrying sequences of −2058 to −708 and −694 to +200 were inserted into pGL-3 vector, and labeled as p27 promoter 1-Luci and p27 promoter 2-Luci, respectively.
We analyze the procedure by performing different experiments on two distinct data types: feature vectors and labeled graphs.
The 491bp DIR1 fragment was cloned, reamplified using vector primers and labeled with P-dCTP using the Stratagene Prime-It II random primer labeling kit.
For a given domain ({mathcal{D}}), a task ({mathcal{T}}) is defined by two parts, a label space ({mathcal{Y}}), and a predictive function f, which is learned from the feature vector and label pairs {xi, yi} where ({text{x}}_{text{i}} in {text{X}}) and ({text{y}}_{text{i}} in {mathcal{Y}}).
Our studies confirm that bringing together delivery vectors, cleavage sites and labelled Lifeact by employing fast and versatile synthetic procedures, provide a "plug and play" accessible strategy useful for simplifying the design of new actin markers with customisable physical, chemical and biological features.
In the common supervised learning scenario, the data set can be represented by a set containing (n) paired feature vectors and labels: (D = { (x_{i},y_{i} )}) ((|D| = n)).
NIH-3T3 cells were transfected with 0, 2.5, 5, and 10 μg of human F8 plasmid vector as described above and labeled with the monoclonal antibodies ab41188 and ESH8.
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