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Glucose or xylose were used as carbon sources, since these are likely to be present in various residue streams derived from lignocellulosic biomass.
Understanding the effects of various residue configurations can assist in better residue management decisions, but this is complex due to various interacting influences.
Downstream refiners can use the narrow-cut data and KR index for process optimization by either cutting deep into the bottom of residua to increase yield or selecting appropriate process units for various residue fractions.
Marked variations between Cα ASA values can be noted between various residue types.
Alignments were edited with the JalView [59] editor which allows the user to visualize alignment conservation via various residue coloring schemes as well as conservation and consensus plots.
Various residue substitution models that describe the probability of replacing one residue with another have been derived from either statistical analysis involving conserved sequence blocks or molecular evolution theories [4], [5], and can be further refined for parameters involving sites under the selection force or for varying substitution rates among relevant sites.
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The graphs also arise as collineation graphs of rank 2 truncations of various residues of certain P-geometries.
The active-site residues of a CA were mutagenized to various residues to increase the deacylation activity of CPC, based on the active-site conformation of the CA structure.
A multiple sequence alignment (Additional file 1: Figure S1) shows conservation in BXA43 of the general base and acid catalytic residues Asp14 and Glu187 as well as Asp127 proposed to modulate pK a of the catalytic acid (Nurizzo et al. 2002), and various residues involved in substrate binding, including His250 at subsite −1 (Brüx et al. 2006).
In this work, we propose a detailed model which describes the rate of protein amine PEGylation with functionalized PEG esters by accounting for the specific reactivity of the various residues and for the shielding effect generated by the already conjugated PEG chains.
The use of the rigid ligands as molecular rulers in conjunction with double-mutant cycle analysis provides a means of mapping the relative positions of various residues in the ligand-binding site of any ligand-receptor complex, and thus is a useful tool for delineating the architecture of the binding site.
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