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Already, some useful data has emerged from this effort, as the mappers have published various gene sequences -- the coded text of individual genes.
When applying the approach to compare various gene sequences, we noted two features of the analysis: (i) the estimated number of synonymous substitutions per synonymous site (d̂S) and the number of nonsynonymous substitutions per nonsynonymous site (d̂N) always showed clear trends along the protein sequence, and (ii) d̂S was more variable than d̂N along the gene sequence.
Many gene sequence comparison studies have been pursued from since the acquisition of various gene sequences from many organisms.
Thus, the genomic data presented here can be mined for various gene sequences or molecular markers that can be used for this purpose.
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Fig. 3 shows examples of the various gene restriction sequences which this model exhibits for different parameter regimes.
Furthermore, various homologous gene sequences and transcripts of putative peroxygenases have been identified in the course of searches in gene databases (Pecyna et al. 2009, Hofrichter et al. 2010).
Together, the dynamics of sequence variation among tandem duplicates show how various forces affecting gene sequences must be integrated with typical 'birth-and-death' ideas of gene family evolution, to produce an adequate model.
Also, we were able to determine using various 16S rRNA gene sequences retrieved from five different species of Haementeria leeches, that they formed a monophyletic cluster which probably originated from within the Providencia clade (supplementary fig. S1, Supplementary Material online).
This study compares the possible regulatory regions of various genes with random sequences and/or coding sequences in order to identify core TRRs.
Many algorithms have been developed to assess the reliability of high-throughput protein interactions [ 13- 15] or predict new protein interactions [ 16- 19], using various information such as gene sequences, annotations, interacting domains, 3D structures, experimental repeatability, or topological characteristics of PPI networks.
The results were annotated using Gene Ontology functional classification for various species that the putative gene sequences have been matched to.
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