Sentence examples for various gene models from inspiring English sources

Moreover, precise inference is more difficult due to incomplete annotation, along with different stringency criteria, customary thresholds to classify true and erroneous AS events, and various gene models used in different species.

For example, are the various gene models (e.g. UCSC, Ensembl, RefSeq, CCDS) in agreement?

Mouse-over tooltips over each probe set provide additional information such as gene name and IDs for various gene models.

PlasmoDB version 4.4 provides, in addition to genomic sequences and gene annotations, various gene models built using algorithms such as PHAT, GeneFinder, GlimmerM and Hexamer [ 6].

To assess the coding potential of the various gene model subsets (Xtev gene models (GM, NGMM, NGM-vv) we used open reading frame (ORF) length and the log likelihood ratio (LLR) of codon bias (see Materials and methods).

We directly imputed the missing data using just one set of (arbitrary) parameters: cross-section on the various genes, modeling the effect of time with a 2nd order polynomial not varying across the cross-section, and 100 multiple imputations.

The predictive performance of the two models is compared to a common genomic BLUP as a reference method in a whole-genome simulation study considering various gene-action models.

We chose to use a piecewise linear model to model various gene expression patterns because it is a flexible yet interpretable model.

This observation was not unexpected because the HI genes in nitrogen-limited medium associate moderately well with the various gene properties in the model, whereas carbon-limited HI does not.

Nevertheless, except in PtMPK5-1, the phases of the various introns found in these gene models are also perfectly conserved.

Comparative genome analysis of the genomic region flanking GSSPs and/or alternative gene models by various prediction programs – Augustus [ 46], Geneid [ 47], GLEAN [ 48], GeneMark [ 49] and Twinscan [ 50], which were incorporated in the Broad Institute's genome browser were used to determine the novel gene models.