Sentence examples for various conformations in from inspiring English sources
Description of π π interactions of various conformations in the vicinity of the conformational defect is done through evaluation of phenyl angle-distance plot obtained from optimized geometries and molecular energy evaluation obtained from single point calculations with three different density functionals.
Sup35p fibers adopt various conformations in vitro that trigger the formation of phenotypically distinct [PSI+] cells upon transformation into [psi−] cells [53] [55].
GABA is a flexible molecule which can adopt various conformations in aqueous solution.
Thus, the protein can adopt various conformations in solution, consistent with the flexibility observed for many stacked helical domains.
The side chain OH group of Ser53 has various conformations in the complexes studied, related by the Cβ Oγ bond rotation, but keeps its hydrogen bond to the phosphate group of pSer21SP20 in all the structures.
Although the structure of the stalk has been determined in various conformations in bacterial ribosomes, it is disordered in crystal structures of both the 80S ribosome (Ben-Shem et al., 2011) and 60S subunit (Klinge et al., 2011) because of its dynamic nature in the absence of interactions with tRNA.
We also attempted to use the molecular mechanics, generalized Born, and surface area free energy method to characterize the free energies of various conformations seen in MD trajectories.
Likewise, we observed that molecular docking generated moderate docking scores in general for the various conformations of kinases in each state (Additional file 1: Table S4, Figure S2).
The fraction of particles from each data set contributing to various conformations is plotted in the histogram.
After complete execution of AutoDock, various conformations of ligand in complex with the receptor were obtained, which were finally ranked on the basis of binding energy.
The distance between R169 and pT219 in various conformations sampled during the MD simulations was calculated using ptraj module of AMBER and other in-house PERL scripts.
