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It is likely that SH3 domain-peptides complexes bind together in various binding modes.
An IDR (intrinsically disordered region) within an IDP often undergoes disorder-to-order transitions upon binding to various partners, allowing an IDP to recognize and bind different partners at various binding interfaces [ 8, 51, 52].
All known NTRs bind FG-repeats, typically exhibiting various binding sites dispersed over their surface (Bednenko et al., 2003).
MTBindingSim is a program that enables users to simulate experiments in which proteins or other ligands (e.g., drugs) bind to microtubules or other polymers under various binding models.
Various binding parameters were evaluated.
By means of XPS the Au XPS states at various binding energies, assigned to differently charged Au nanoparticles, were distinguished.
Templates can be proteins with various binding partners including other proteins (green), peptides (teal), RNA/DNA (brown) or small molecules (red star).
Molecular docking study of dihydroquinazolinones with the enzyme revealed the information regarding various binding forces involved in the interaction.
We designed a series of DNA aptamer sequences specific to doxorubicin, displaying multiple binding sites and various binding affinities.
In addition, the various binding modes of RmMan134A M5 indicated that subsites −2 to +2 are indispensable during the hydrolytic process.
In a paper to be presented at this conference (Apaydin et al., 2002b) we have also applied SRS to ligand docking in which we calculate the dynamics of ligand-protein association and dissociation in the region of various binding sites on a number of proteins.
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